plot profiles — plotProfile • deepToolsDownstream

Plot a profile for counts.

plotProfile(
  se,
  loessSmooth = TRUE,
  span = 1/25,
  facet = "group",
  xaxis_breaks = NULL,
  xaxis_label = NULL
)

Arguments

se	a SummarizedExperiment object from importCount.
loessSmooth	Use loess.smooth to smooth curve or not.
span	smoothness parameter for loess.
facet	group or sample. This will be passed to facet_wrap. It can be set to NULL.
xaxis_breaks, xaxis_label	xaxis breaks and labels. see scale_x_continuous.

ggplot object

file <- system.file("extdata", "count.gz", package= "deepToolsDownstream")
se <- importCount(file)
plotProfile(se)