Aligns two sets of genomic with x,y,z

Source: R/alignCoor.R

Aligns two sets of points via rotations and translations by Kabsch Algorithm.

alignCoor(query, subject)

Arguments

query, subject

GRanges objects to alignment.

Value

A GRanges object of query aligned to subject.

Examples

x <- readRDS(system.file("extdata", "4DNFI1UEG1HD.chr21.FLAMINGO.res.rds",
  package = "geomeTriD"
))
res <- alignCoor(x, x)
A <- view3dStructure(x, k = 3, renderer = "none")
B <- view3dStructure(res, k = 3, renderer = "none")
B <- lapply(B, function(.ele) {
  .ele$side <- "right"
  .ele
})
threeJsViewer(c(A, B))