Hierarchical Clustering motifs

functions to perfom clustering of output of matalign

motifHclust(align, ...)

Arguments

align	output of matalign, used to generate distance matrix.
...	parameter to pass to the hclust.

Value

An object of hclust.

Examples

 if(interactive() || Sys.getenv("USER")=="jianhongou"){
  fp <- system.file("extdata", package="motifStack")
  fs <- dir(fp, "pcm$")
  pcms <- importMatrix(file.path(fp, fs), format="pcm")
  align <- matalign(pcms)
  hc <- motifHclust(align, method="average")
 }