shuffle reads — shuffle • uShuffleR

Uses the uShuffle library to shuffle reads

shuffle(reads, k = 2, n = 2)

Arguments

reads	An object of BStringSet.
k	the k-let size.
n	the number of random sequences to generate.

Value

An object of BStringSet.

Examples

f <- system.file("extdata", "test.fa", package="uShuffleR")
shuffle(f)
#> DNAStringSet object of length 2:
#>     width seq                                               names               
#> [1]    32 ACAGATGGTTCAAGGTCGATCTTTAGTTAGGC                  read1_shuffle_1
#> [2]    32 AGTTTGAGTTACAGGGTAGGCTTCATCGAATC                  read1_shuffle_2