BWA_INDEX module

params.options

• publish_dir, publish directory, default 'genome/bwa_index'
• publish_mode, publish mode, default 'copy'
• publish_enabled, publish enabled, defaul false
• args, arguments for bwa index command, default: "-a bwtsw"

labels

• process_high

input

• path fasta, genome fasta file path

output

• tuple path("${fasta}.*"), path(fasta), emit: index
• path "bwa.version.txt", emit: version