SAMTOOLS_SORT module

params.options

• publish_dir, publish directory, default 'sort'
• publish_mode, publish mode, default 'copy'
• publish_enabled, publish enabled, defaul true
• args, arguments for samtools sort command, default: ""
• suffix, suffix for output file name, default ".sorted"

labels

• process_medium

input

• tuple val(meta), path(bam); meta must have key id.

output

• tuple val(meta), path("*.bam"), emit: bam
• path "samtools.version.txt", emit: version