SAMTOOLS_STATS module

run samtools stats, idxstats, and flagstat

params.options

• publish_dir, publish directory, default 'sort'
• publish_mode, publish mode, default 'copy'
• publish_enabled, publish enabled, defaul true

input

• tuple val(meta), path(bam), path(bai); meta must have key id.

output

• tuple val(meta), path("*.stats"), emit: stats
• tuple val(meta), path("*.flagstat"), emit: flagstat
• tuple val(meta), path("*.idxstats"), emit: idxstats
• path "samtools.version.txt", emit: version