TRIMGALORE module

params.options

• publish_dir, publish directory, default 'trimmed'
• publish_mode, publish mode, default 'copy'
• publish_enabled, publish enabled, default true
• args, arguments for trim_galore, default ''
• clip_r1: 0
• clip_r2: 0
• three_prime_clip_r1: 0
• three_prime_clip_r2: 0

labels

• process_medium

input

• tuple val(meta), path(reads); meta must contain keys id and single_end

output

• tuple val(meta), path("*.fq.gz"), emit: reads
• tuple val(meta), path("*.html"), emit: html optional true
• tuple val(meta), path("*.zip"), emit: zip optional true
• tuple val(meta), path("*report.txt"), emit: log
• path "trimgalore.version.txt", emit: version