Pre-clustered motifs from human and mouse

Source: R/motifs.R

The data were extracted from MotifDb package (v 1.34.0) and grouped by motifStack package (v 1.37.2). The data were packaged as PFMatrixList object by TFBSTools (v 1.30.0)

data(motifs)

Format

a list of PFMatrixList. The names of the list is the grouop distance.

Source

MotifDb package. Source code for the data generation is in extdata folder

Examples


data(motifs)
names(motifs)
#>  [1] "dist10"  "dist20"  "dist30"  "dist40"  "dist50"  "dist60"  "dist70" 
#>  [8] "dist80"  "dist90"  "dist100"
motifs[[1]]
#> PWMatrixList of length 603
#> names(603): POU2F2 FOSB::JUNB GATA3 FEV MIXL1 ... RARA THRA THRB ESRRG PPARG