Enhancers() `$`(<Enhancers>) `$<-`(<Enhancers>) distance(<Enhancers>,<ANY>) `distance<-`(<Enhancers>) getSeq(<Enhancers>) subsetByOverlaps(<Enhancers>,<ANY>) subset(<Enhancers>) seqinfo(<Enhancers>) genome(<Enhancers>) `genome<-`(<Enhancers>) peaks(<Enhancers>) `peaks<-`(<Enhancers>) show(<Enhancers>)
Enhancers()
`$`(<Enhancers>)
`$<-`(<Enhancers>)
distance(<Enhancers>,<ANY>)
`distance<-`(<Enhancers>)
getSeq(<Enhancers>)
subsetByOverlaps(<Enhancers>,<ANY>)
subset(<Enhancers>)
seqinfo(<Enhancers>)
genome(<Enhancers>)
`genome<-`(<Enhancers>)
peaks(<Enhancers>)
`peaks<-`(<Enhancers>)
show(<Enhancers>)
Class "Enhancers"
"Enhancers"
alignment()
Output
alignmentOne()
Get alignment scores
getENCODEdata()
Download enhancer sequences from ENCODE
queryEncode()
query data from ENCODE by predefined criteria
saveAlignments()
output alignments