enhancerHomologSearch 0.99.12
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Reference

All functions

Enhancers() `$`(<Enhancers>) `$<-`(<Enhancers>) distance(<Enhancers>,<ANY>) `distance<-`(<Enhancers>) getSeq(<Enhancers>) subsetByOverlaps(<Enhancers>,<ANY>) subset(<Enhancers>) seqinfo(<Enhancers>) genome(<Enhancers>) `genome<-`(<Enhancers>) peaks(<Enhancers>) `peaks<-`(<Enhancers>) show(<Enhancers>)

Class "Enhancers"

alignment()

Output

alignmentOne()

Get alignment scores

getENCODEdata()

Download enhancer sequences from ENCODE

queryEncode()

query data from ENCODE by predefined criteria

saveAlignments()

output alignments

Contents

Developed by Jianhong Ou, Kenneth Poss.

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