calculate the gene cluster

A short description...

getGeneCluster(queryGR, queryGeneName, homologsList, k = 10, radius = 0)

Arguments

queryGR

The query GRanges outputted by grangesFromEnsemblIDs.

queryGeneName

The center gene used to search.

homologsList

The homologs list outputted by getHomologGeneList.

k

The maximum number of nearest genes.

radius

The maximum number of gap genes for the search. If radius is set to greater than 0, k parameter will be ignored.

Value

The ids of the cluster for the center gene.

Examples

# example code