Package index • geneClusterPattern

All functions
`fromOrthogroups()`	Read Orthologues results as a list This function is under-development.
`geneClusterPattern` `geneClusterPattern-package`	Plot conserved gene pattern cross multiple species
`geneOrderScore()`	Calculate the gene order score
`getGeneCluster()`	calculate the gene cluster
`getGeneRank()`	Get the gene position orders
`getHomologGeneList()`	Get the gene positions for homologs
`getHomologListForOrthoFinder()`	Get the gene position orders for output of OrthoFinder
`grangesFromEnsemblIDs()`	create a GRanges object by given ensembl gene ids
`guessSpecies()`	Guess the species
`homologsFromEnsemblIDs()`	retrieve a homologs by given ensembl gene ids
`orthologPairsFromOrthoFinder()`	Read orthoFinder Orthologues results as a list Read orthoFinder Orthologues results as a list for each pair of orthologs.
`plotGeneClusterPatterns()`	plot gene patters for given ids
`pruningSequences()`	Drop non-standard chromosomes Remove the unwanted chromosomes from a list of GRanges object.

Reference