Reference

All functions
geneOrderScore()	Calculate the gene order score
getGeneCluster()	calculate the gene cluster
getGeneRank()	Get the gene position orders
getHomologForOrthoFinder()	Get the gene positions for output of OrthoFinder
getHomologGeneList()	Get the gene positions for homologs
getHomologGeneRankList()	Get the gene position orders for homologs
getHomologListForOrthoFinder()	Get the gene position orders for output of OrthoFinder
grangesFromEnsemblIDs()	create a GRanges object by given ensembl gene ids
guessSpecies()	Guess the species
homologsFromEnsemblIDs()	retrieve a homologs by given ensembl gene ids
orthologPairsFromOrthoFinder()	Read orthoFinder Orthologues results as a list
plotGeneClusterPatterns()	plot gene patters for given ids
pruningSequences()	Drop non-standard chromosomes