Guess the species

Guess the species for a given string.

guessSpecies(
  species,
  output = c("abbr", "scientific name", "mart", "taxid", "common name"),
  ...
)

Arguments

species

A character(1L) to guess.

output

Output type.

...

Parameter will be passed to useEnsembl.

Value

A character or Mart object.

Examples

if(interactive()){
  guessSpecies('zebrafish')
  guessSpecies('Japanese medaka')
  guessSpecies('stickleback')
  guessSpecies('hsapiens', output='scientific name')
  guessSpecies('human', output='taxid')
  guessSpecies('hg38', output='scientific name')
  guessSpecies('hg38', output='taxid')
  guessSpecies('GRCh38', output='scientific name')
  guessSpecies('GRCh38', output='taxid')
}