plot gene patters for given ids — plotGeneClusterPatterns • geneClusterPattern

Plot the gene patters for given ids.

plotGeneClusterPatterns(
  genesList,
  ids,
  additionalID,
  max_gap = 1e+07,
  colors,
  maxNonEssential = 5,
  alignType = c("local", "global")
)

Arguments

genesList: A list of GRanges.
ids: IDs to be plotted. See getGeneCluster.
additionalID: Other IDs should be included.
max_gap: The maximal gaps from the first ID in `ids`.
colors: The colors for genes
maxNonEssential: The maximal number for non-essential genes between two essential genes.
alignType: Align the gene pattern by query gene ('local') or by the clusters ('global').

invisible list of plot data.

# example code