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jianhong/
shotgun
This pipeline analyses data for shotgun data.
https://github.com/jianhong/shotgun
Introduction
Usage docs
Parameter docs
Output docs
MultiQC
Visualization
Krona
Kaiju
Kraken2
mOTUs2
Pavian
s1
s2
s3
s4
Command copied!
Paste this command into your terminal to run the pipeline with a small test dataset.