Create annotation features — getFeatureGR • geomeTriD.documentation

Generate annotation features (feature.gr for view3dStructure) from TxDb and Org object.

getFeatureGR(
  txdb,
  org,
  range,
  keytype = "ENTREZID",
  geneSymbolColumn = "SYMBOL",
  cols = seq.int(7)
)

Arguments

txdb: An TxDb object.
org: An OrgDb object.
range: GRanges object. The coordinates.
geneSymbolColumn, keytype: The column names in the OrgDb for key of TxDb and the gene symnbols.
cols: The colors for each gene.

A GRanges object

# example code