Import Hickit output — import3dg • geomeTriD.documentation

Import 3dg file from Hickit output to a GRangesList Object

import3dg(
  filenames,
  comment.char = "#",
  ...,
  parental_postfix = c("(pat)", "(mat)")
)

Arguments

filenames: Vector of character. The 3dg file names of output of Hickit
comment.char, ...: parameters pass to rea.delim.
parental_postfix: the postfix of chromosome names. Default is c("(pat)", "(mat)"). For hickit, it maybe c('a', 'b').

Value

An object of GRangesList

Examples

f3dg <- system.file('extdata', 'GSE162511',
 'GSM4382149_cortex-p001-cb_001.20k.1.clean.3dg.txt.gz',
  package='geomeTriD.documentation')
xyz <- import3dg(f3dg)