Import SuperRec output

Import SuperRec output to a GRangesList Object

importSuperRec(filenames, superRecInputFilenames, binsize, chr)

Arguments

filenames

Vector of character. The file names of output of SuperRec

superRecInputFilenames

Vector of character. The filenames of input of SuperRec.

binsize

Bin size of the interaction. It will be the width of GRanges.

chr

Chromosome name

Value

An object of GRangesList

Examples

extdata <- system.file('extdata', 'GSE63525', package = 'geomeTriD.documentation')
superRec_chrX_5kb <- importSuperRec(
  file.path(extdata, 'combined_30.chrX.SuperRec.txt.gz'),
  file.path(extdata, 'combined_30.chrX.SuperRec.input.subset.gz'),
  binsize = 5000, chr='chrX')[[1]]