calculate coverage

calculate coverage for GRanges, GAlignments or GAlignmentPairs

coverageGR(gr)

Arguments

gr

an object of RGanges, GAlignments or GAlignmentPairs

Value

an object of GRanges

See also

See Also as coverage, coverage-methods

Examples

bed <- system.file("extdata", "fox2.bed", package="trackViewer",
                   mustWork=TRUE)
fox2 <- importScore(bed)
fox2$dat <- coverageGR(fox2$dat)