Package index • trackViewer

All functions
`ARA()`	Aggregate Region Analysis
`GIoperator()`	GInteractions operator
`GRoperator()`	GRanges operator
`addArrowMark()`	Add arrow mark to the figure at a given position
`addGuideLine()`	Add guide lines to the tracks
`addInteractionAnnotation()`	Add annotation markers to the figure at a given position
`browseTracksOutput()` `renderbrowseTracks()`	Shiny bindings for browseTracks
`browseTracks()`	browse tracks
`coverageGR()`	calculate coverage
`dandelion.plot()`	dandelion.plots
`geneModelFromTxdb()`	Prepare gene model from an object of TxDb
`geneTrack()`	track from TxDb
`getCurTrackViewport()`	Get current track viewport
`getGeneIDsFromTxDb()`	get gene ids by genomic location
`getLocation()`	get genomic location by gene symbol
`gi2track()`	convert GInteractions to track object
`gieStain()`	color sheme for the schema for Chromosome Band (Ideogram)
`gridPlot()`	plot GRanges metadata
`ideogramPlot()`	plot ideogram with data
`importBam()`	Reading data from a BAM file
`importData()`	Reading data from a BED or WIG file to RleList
`importGInteractions()`	Reading data from a ginteractions, hic, cool, or validPairs file
`importScSeqScore()`	plot tracks for single cell RNAseq
`importScore()`	Reading data from a BED or WIG file
`listChromosomes()`	List the available chromosome
`listResolutions()`	List the available resolutions
`loadIdeogram()`	load ideogram from UCSC
`lolliplot()`	Lolliplots
`optimizeStyle()`	Optimize the style of plot
`parse2GRanges()`	parse text into GRanges
`parseWIG()`	convert WIG format track to BED format track
`plotGRanges()`	plot GRanges data
`plotIdeo()`	plot ideogram
`plotOneIdeo()`	plot ideogram with data for one chromosome
`pos-class` `pos`	Class `"pos"`
`reduce(<GInteractions>)`	Reduce method for 'GInteractions'
`seqlevelsStyle<-`(<trackList>) `trackList()`	List of tracks
`seqlevels(<track>)` `seqlevelsStyle(<track>)` `seqlevelsStyle<-`(<track>) `show(<track>)` `$`(<track>) `$<-`(<track>) `setTrackStyleParam()` `setTrackXscaleParam()` `setTrackYaxisParam()`	Class `"trackStyle"`
`trackViewer` `trackViewer-package`	Minimal designed plotting tool for genomic data
`trackViewerStyle()` `setTrackViewerStyleParam()`	Class `"trackViewerStyle"`
`viewGene()`	plot tracks based on gene name
`viewTracks()`	plot the tracks
`xscale-class` `xscale`	Class `"xscale"`
`yaxisStyle-class` `yaxisStyle`	Class `"yaxisStyle"`

Reference

All functions