List the available normalizations

List the normalizations available in the file.

listNormalizations(file, format = c("hic", "cool"))

Arguments

file

character(1). File name of .hic or .cool/.mcool/.scool

format

character(1). File format, "hic" or "cool".

Examples

hicfile <- system.file("extdata", "test_chr22.hic", package="trackViewer")
listNormalizations(hicfile)
#> [1] "VC"      "VC_SQRT" "KR"      "NONE"   
coolfile <- system.file("extdata", "test.mcool", package="trackViewer")
listNormalizations(coolfile, format="cool")
#> [1] "NONE"